sokrypton / sokrypton/ColabFold
Multiple alphafold-colabfold versions for same ColabFold version
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- Dominant language
- Jupyter Notebook
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Description
Hello, I am currently running colabfold.
Today, I found out that even the same version of the colabfold package (version 1.5.5),
The version of the alphafold-colabfold can be differ for when I downloaded the colabfold package,
which can be 2.3.6 or 2.3.8.(latest).
I want to set the environment that is compatible with alphafold-colabfold==2.3.6 because of compatibility with previous runs,
but current colab notebook supports only the newest version.
Thank you.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with the current Colab notebook and compare how it selects alphafold-colabfold for ColabFold 1.5.5. Define how a user could reproduce runs requiring version 2.3.6 while retaining support for the newer 2.3.8 release; done means the requested version can be selected reliably.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- jupyter-notebook
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100