sokrypton / sokrypton/ColabFold
[RuntimeError: Resource exhausted] Upper-limit for protein length with Colab Pro?
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- Dominant language
- Jupyter Notebook
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Description
I'm running a job with a length of ~1,100 amino acids. This requires 13497323384 (~13.5 Gb) of memory. However, I get the following:
RuntimeError: Resource exhausted: Out of memory while trying to allocate 13497323384 bytes.
I am currently using a GPU with High-RAM settings.
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Research direction
The report names no files, tests, or entry points. Start by reproducing the approximately 1,100-amino-acid job in Colab Pro with High-RAM GPU settings and investigate the reported 13.5 GB allocation failure. Done means establishing the supported protein-length limit or documenting a confirmed explanation for the resource exhaustion.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- jupyter-notebook
- Domain
- bioinformatics, machine-learning
- Issue type
- Bug
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100