sokrypton / sokrypton/ColabFold
RoseTTAFold2 peptides model prediction with "MAS" named residues!
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Description
Predicted residues with "MAS" residues.
why is not named by standard amino acid codes (three letter)? What does this MAS means to the predicted residue position?
Example :
ATOM 116 N MAS A 8 3.676 -8.070 7.023 1.00 67.22
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by tracing how RoseTTAFold2 prediction output produces the example ATOM record with the MAS residue code. Determine whether MAS is intentional and what it represents at the predicted position; the issue is done when that behavior is explained or the output uses standard three-letter amino-acid codes.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100