sokrypton / sokrypton/ColabFold
Jax dependency Issue
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Description
Jax discontinued linear_util since v0.4.25 (latest) which means that when haiku is imported running jax@latest it crashes and since colabfold's pyproject.toml says its fine with any version of jax which is 0.4.20 above it causes issues running several methods of colabfold.
Please let me know if this makes sense or would you require more info.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with pyproject.toml and the import path for haiku; reproduce the crash with the latest Jax and inspect the allowed Jax version range. Done means ColabFold imports successfully and the affected methods run without the reported compatibility failure.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics, machine-learning
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100