sokrypton / sokrypton/ColabFold
Find out the exact version of the remote sequence libraries used to build the msa with colabfold_batch
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Description
Hi,
is is possible to find out the exact version of the sequence libraries at the remote mmseqs server used to build the msa when running colabfold_batch locally (https://github.com/YoshitakaMo/localcolabfold) ?
Expected Behavior
This would be helpful to report your methods in publications and to make your multiple sequence alignments reproducible.
Your Environment
"host_url": "https://api.colabfold.com",
"user_agent": "colabfold/1.5.5 (d36504fad856a0e1df511c5b0434957707030319)",
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Begin by tracing how localcolabfold's colabfold_batch uses the api.colabfold.com endpoint and review the reported user-agent for version metadata. Determine whether the remote service exposes exact sequence-library versions; done means users can retrieve the versions used for an MSA and report them for reproducibility.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 30/100