sokrypton / sokrypton/ColabFold
Keep only the most diverse sequences in evey cluster
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Description
Expected Behavior
The right parameter for --diff N to keep a specific number in every cluster.
Current Behavior
The website https://colabfold.mmseqs.com/ says it keeps only the 10 most diverse sequences by setting --diff 100
Steps to Reproduce (for bugs)
Read the Database information section at website https://colabfold.mmseqs.com/.
I want to know why the parameter of filterresult --diff is 100 when i want to keep only 10 sequences.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with the website's Database information section and the explanation of filterresult --diff. Check how --diff 100 is described relative to keeping 10 sequences in each cluster. Done means the documentation clearly explains the parameter and gives the correct value or usage for the requested count.
Written by the indexing model from the issue text.
Assessment
- Domain
- documentation
- Issue type
- Documentation
- Difficulty
- 1/5
- Estimated time
- Under an hour
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100