sokrypton / sokrypton/ColabFold
How to read the pae file
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Description
The latest version generates pae files that do not have any clear seperaters or guidelines where chain A ends and chain B starts. How to read them?
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
The issue names generated PAE files but no repository file, test, or entry point. Locate the code or documentation that produces or describes PAE output, then determine how chain boundaries are represented and document a reproducible way to read the files.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Documentation
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100