sokrypton / sokrypton/ColabFold
Cannot connect to a high RAM runtime even with 544 compute units
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- Jupyter Notebook
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Description
Expected Behavior
should be able to connect to high RAM runtime
Current Behavior
Will not connect me to a high RAM runtime; the same thing is happening for someone else in our lab with a Colab "pay as you go" subscription. We have successfully used Colabfold a few weeks ago.
However, I went into "making the most of your Colab subscription and ran the same code and got connected to a high RAM runtime
Steps to Reproduce (for bugs)
Please make sure to reproduce the issue after a "Factory Reset" in Colab.
If running locally ypdate you local installation colabfold_batch to the newest version.
Please provide your input if you can share it.
ColabFold Output (for bugs)
Please make sure to also post the complete ColabFold output. You can use gist.github.com for large output.
Context
Providing context helps us come up with a solution and improve our documentation for the future.
I'm running the notebook in this link https://colab.research.google.com/github/sokrypton/ColabFold/blob/main/AlphaFold2.ipynb#scrollTo=mbaIO9pWjaN0
Your Environment
Include as many relevant details about the environment you experienced the bug in.
- Git commit used
- If you run it on a local system. Please add the server specifications
not being run on a local system - Operating system and version:
Windows 10 pro version 22H2, 64 bit
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with AlphaFold2.ipynb and reproduce the reported runtime behavior after a Colab Factory Reset, using the notebook settings and subscription context described. Confirm whether the failure is reproducible, then collect the complete ColabFold output and relevant environment details so the runtime connection problem can be diagnosed.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- jupyter-notebook
- Domain
- cloud, machine-learning
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100