sokrypton / sokrypton/ColabFold

Cannot connect to a high RAM runtime even with 544 compute units

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Dominant language
Jupyter Notebook
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Description

Expected Behavior

should be able to connect to high RAM runtime
resources
notebook setting

Current Behavior

Will not connect me to a high RAM runtime; the same thing is happening for someone else in our lab with a Colab "pay as you go" subscription. We have successfully used Colabfold a few weeks ago.
not using high RAM
gpu not available

However, I went into "making the most of your Colab subscription and ran the same code and got connected to a high RAM runtime
making the most

Steps to Reproduce (for bugs)

Please make sure to reproduce the issue after a "Factory Reset" in Colab.
If running locally ypdate you local installation colabfold_batch to the newest version.
Please provide your input if you can share it.

ColabFold Output (for bugs)

Please make sure to also post the complete ColabFold output. You can use gist.github.com for large output.

Context

Providing context helps us come up with a solution and improve our documentation for the future.
I'm running the notebook in this link https://colab.research.google.com/github/sokrypton/ColabFold/blob/main/AlphaFold2.ipynb#scrollTo=mbaIO9pWjaN0

Your Environment

Include as many relevant details about the environment you experienced the bug in.

  • Git commit used
  • If you run it on a local system. Please add the server specifications
    not being run on a local system
  • Operating system and version:
    Windows 10 pro version 22H2, 64 bit

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start with AlphaFold2.ipynb and reproduce the reported runtime behavior after a Colab Factory Reset, using the notebook settings and subscription context described. Confirm whether the failure is reproducible, then collect the complete ColabFold output and relevant environment details so the runtime connection problem can be diagnosed.

Written by the indexing model from the issue text.

Assessment

Tech stack
jupyter-notebook
Domain
cloud, machine-learning
Issue type
Bug
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

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