sokrypton / sokrypton/ColabFold
Cyclic peptide support
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- Dominant language
- Jupyter Notebook
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Description
Thanks for amazing notebook!
Support for cyclic peptides was recently proposed here:
https://www.biorxiv.org/content/10.1101/2023.02.25.529956v1
It's already supported in ColabDesign but not in ColabFold. Would it be possible to add it here too?
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reading the linked bioRxiv proposal and comparing ColabFold with ColabDesign, where cyclic peptides are already supported. Identify the ColabFold notebook entry points involved in peptide handling and define done as equivalent cyclic-peptide support being available in ColabFold.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- jupyter-notebook
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100