sokrypton / sokrypton/ColabFold

Error installing dependencies for WazyAlphaFold2.ipynb

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Jupyter Notebook
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Description

When I try to run WazyAlphaFold2.ipynb it is giving me a "resolutionimpossible" error during the "Install dependencies" step

image

Expected Behavior: install dependencies

Current Behavior: "resolutionimpossible" error

Steps to Reproduce (for bugs)

I don't know how to "Factory Reset" in latest Colab version
I was running in the high RAM paid account, now I let the subscription stop so I don't know if that's what's causing the error. But before I upgraded to pro it never had this problem
Input: VLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYANETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIY
Then all defaults

ColabFold Output (for bugs)

https://colab.research.google.com/github/ur-whitelab/wazy/blob/master/colab/WazyAlphaFold2.ipynb#scrollTo=iccGdbe_Pmt9
ERROR: Cannot install
ERROR: ResolutionImpossible

Context

Never experiences this error using both free and Colab Pro high RAM environment

Your Environment

Colab free version online
Python 3 Google Compute Engine backend (GPU)

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Open colab/WazyAlphaFold2.ipynb and reproduce the “Install dependencies” step in the stated Colab Python 3 GPU environment. Review the ResolutionImpossible output and dependency inputs; done means the notebook installs its dependencies and proceeds with the provided input and defaults.

Written by the indexing model from the issue text.

Assessment

Tech stack
jupyter-notebook, python
Domain
bioinformatics
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
35/100

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