sokrypton / sokrypton/ColabFold
Error installing dependencies for WazyAlphaFold2.ipynb
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Description
When I try to run WazyAlphaFold2.ipynb it is giving me a "resolutionimpossible" error during the "Install dependencies" step

Expected Behavior: install dependencies
Current Behavior: "resolutionimpossible" error
Steps to Reproduce (for bugs)
I don't know how to "Factory Reset" in latest Colab version
I was running in the high RAM paid account, now I let the subscription stop so I don't know if that's what's causing the error. But before I upgraded to pro it never had this problem
Input: VLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYANETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIY
Then all defaults
ColabFold Output (for bugs)
https://colab.research.google.com/github/ur-whitelab/wazy/blob/master/colab/WazyAlphaFold2.ipynb#scrollTo=iccGdbe_Pmt9
ERROR: Cannot install
ERROR: ResolutionImpossible
Context
Never experiences this error using both free and Colab Pro high RAM environment
Your Environment
Colab free version online
Python 3 Google Compute Engine backend (GPU)
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Open colab/WazyAlphaFold2.ipynb and reproduce the “Install dependencies” step in the stated Colab Python 3 GPU environment. Review the ResolutionImpossible output and dependency inputs; done means the notebook installs its dependencies and proceeds with the provided input and defaults.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- jupyter-notebook, python
- Domain
- bioinformatics
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100