sokrypton / sokrypton/ColabFold
ModuleNotFoundError: No module named 'colabfold'
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- Dominant language
- Jupyter Notebook
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Description
ModuleNotFoundError Traceback (most recent call last)
in
3 import glob
4 import matplotlib.pyplot as plt
----> 5 from colabfold.colabfold import plot_plddt_legend
6 rank_num = 1 #@param ["1", "2", "3", "4", "5"] {type:"raw"}
7 color = "lDDT" #@param ["chain", "lDDT", "rainbow"]
ModuleNotFoundError: No module named 'colabfold'
NOTE: If your import is failing due to a missing package, you can
manually install dependencies using either !pip or !apt.
To view examples of installing some common dependencies, click the
"Open Examples" button below.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by running the notebook import that raises ModuleNotFoundError and check the ColabFold dependency setup, using the pip or apt installation guidance mentioned in the error. Done means the notebook can import colabfold.colabfold and reach plot_plddt_legend without the missing-module error.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- jupyter-notebook, python
- Domain
- bioinformatics
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100