sokrypton / sokrypton/ColabFold
Instructions for generating pdb70_cif.ff{data,index}
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Description
We would like to run our own template server and for this we need the pdb70_cif.ff{data,index} database. Would you be able to either share the existing database that you have or to give us some rough instructions on how to generate it?
If you send us some rough instructions, we can clean them up and add them to https://github.com/sokrypton/ColabFold/tree/main/TemplateServer for the benefit of future users.
Expected Behavior
Anyone can run TemplateServer
Current Behavior
TemplateServer is missing instructions on how to build one of the DBs.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start in the TemplateServer directory and review how its existing databases are documented or generated. Determine the steps needed to create pdb70_cif.ff{data,index}, then document them so another user can run TemplateServer with that database independently.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics, documentation
- Issue type
- Documentation
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100