sokrypton / sokrypton/ColabFold
Failed to build DB from downloaded DB_FILE
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Description
Built MSA from already downloaded DB_File from colabfold.mmseqs.com using command:
tar xzvf "uniref30_2103.tar.gz"
mmseqs tsv2exprofiledb "uniref30_2103" "uniref30_2103_db"
mmseqs createindex "uniref30_2103_db" tmp1 --remove-tmp-files 1
However, it went wrong with notion:
Invalid Command: tsv2exprofiledb
I am wondering if convertprofiledb should be used or other operations needed?
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First steps
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Research direction
Reproduce the listed tar, tsv2exprofiledb, and createindex commands against the downloaded uniref30_2103 archive; first verify which database-building command is available in the environment and whether the archive format matches it. Done means documenting or correcting the command sequence so the database can be built and indexed without the Invalid Command error.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics, cli, databases
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100