sokrypton / sokrypton/ColabFold
Feature request: sequence from uniprot id and residue numbers
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- Dominant language
- Jupyter Notebook
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Description
Hi,
These notebooks are super cool, thanks so much for the continuous updates. I have one feature request: pulling in sequences from UniProt ID-s, preferably also cutting needed residues. This would be so helpful not having to go to uniprot, finding residue numbers and copy-pasting needed sequences. One possible format could be e.g. P12004/23-45:P99999
Or maybe should I do it and make a pull request with this feature?
Thank you!
Julia
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by locating the project notebooks and the existing sequence-input handling; the issue names no file or test. Clarify the requested UniProt ID format, including optional residue ranges such as P12004/23-45:P99999, and consider the work done when the notebooks can retrieve and trim those sequences consistently.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- jupyter-notebook
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 30/100