sokrypton / sokrypton/ColabFold
colabfold_searcxh
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- Dominant language
- Jupyter Notebook
- Stars
- 2.9k
- Forks
- 747
- PR merge metrics
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Description
When I run colabfold_search it gets stuck with the following output and nothing else happens. No file is being written in the output folder.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reproducing the colabfold_search run that produces the attached screenshot, then inspect where execution stops and whether the output folder is writable. Done means the command completes and writes the expected output file, with the cause and verification steps documented.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- jupyter-notebook
- Domain
- bioinformatics, cli
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100