sokrypton / sokrypton/ColabFold
Output o PDB for each recycle step
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- Dominant language
- Jupyter Notebook
- Stars
- 2.9k
- Forks
- 747
- PR merge metrics
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Description
Expected Behavior
It would be great if a PDB could be generated for each recycle step. That would enable one to see how many recycle steps are needed to fine tune a particular structure and it would enable really cool folding animations:)
Current Behavior
Currently a PDB gets generated only for the last step.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
The issue names no files, tests, or entry points. Start by locating the recycle-step output path in the ColabFold code, then verify that each step produces a PDB while the final output remains available.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- jupyter-notebook
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 42/100