sokrypton / sokrypton/ColabFold
Upper limit of protein length running ColabFold locally
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- Dominant language
- Jupyter Notebook
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Description
Hi,
I'm running ColabFold locally using only cpu. I'm wondering if there would still be the 1400aa length limit. If so, is there any way to bypass the limit? The protein I'm trying to predict contains more than 2500aa.
Many thanks,
Ke
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
No file, test, or entry point is named. First determine whether the 1400aa limit applies to local CPU runs and whether bypassing it is supported; done would be a clear maintainer answer or a separately scoped implementation request for proteins over 2500aa.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- jupyter-notebook
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100