sokrypton / sokrypton/ColabFold
Index error/ List Index out of range
Nobody has claimed this yet.
- Dominant language
- Jupyter Notebook
- Stars
- 2.9k
- Forks
- 747
- PR merge metrics
- No merged PRs in 30d
Description
I was predicting the structure of a complex using the CoLab (AlphaFold2) by uploading unpaired alignments of the monomers. I encountered the error (List index out of range) at the Prediction step and am unsure of how to resolve it. I tried resetting the run using Factory run, and Run all but the error persists, so could you help me out in this regard.
P.S. After perusing the list of issues flagged by users on this platform, I noticed that my request is similar to this user (https://github.com/sokrypton/ColabFold/issues/128).
I am at your disposal of any further information.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
No source file or test is named. Start by reproducing the Prediction step in the Colab notebook with the unpaired monomer alignments, then compare the behavior and requested details with issue #128; done means identifying the input or workflow that triggers the error and documenting or fixing it.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- jupyter-notebook
- Domain
- bioinformatics, machine-learning
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100