sokrypton / sokrypton/ColabFold
paired and unpaired MSA using local MMSEQ
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Description
Is there a way to get MSA for multimers (homo/hetro) with the local MMSEQ similar to what the API outputs?
I am running the version compiled from git, downloaded about a month and a half ago.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by locating the local MMSEQ workflow and comparing its MSA behavior with the API output for multimers, including homo- and heteromers. Done should mean that the local path can produce the requested paired and unpaired MSA results, with documented verification against the API behavior.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100