snakemake / snakemake/snakemake
FTP remote on kubernetes
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- Dominant language
- Python
- Stars
- 2.9k
- Forks
- 656
- Avg merge
- 4d 12h
- Merged PRs (30d)
- 9
Description
Hi!
I have been trying to run a snakemake workflow on Kubernetes (OpenStack) with n remote FTP. The problem is when running snakemake with remote and Kubernetes together, I could not find a straightforward way of setting username and password for the FTP server. The RemoteProvider (as described in the doc) does not have any effect. The IP address and port are taken care of by remote prefix but not username and password.
Is there any way of setting user and pass for FTP server?
Cheers!
Payam
Contributor guide
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by tracing how RemoteProvider and the remote prefix are handled when Snakemake runs on Kubernetes. Check the documentation and relevant Kubernetes execution path for existing credential configuration, then define completion as FTP username and password being configurable and used by the remote connection.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- kubernetes, python
- Domain
- cloud, infrastructure
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100