scverse / scverse/squidpy

[BUG] label harmonization across blocks

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#918 1 comment 0 reactions 0 assignees View on GitHub

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bug :bug:
Dominant language
Python
Stars
598
Forks
121
Avg merge
3d 11h
Merged PRs (30d)
3

Description

Description

Currently, the label harmonization across blocks is not working as intended when cell density is high. See https://github.com/scverse/spatialdata/pull/664 for discussion.

When correctly implemented, should update the relabel docstring for spatialdata map_raster.

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Read the issue description and the discussion in spatialdata PR #664 first, focusing on label harmonization across blocks at high cell density. Then locate the spatialdata map_raster relabel documentation mentioned in the issue. Done means the harmonization behavior is corrected and the map_raster relabel docstring is updated.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
data-visualization
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
35/100

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