squidpy (non-graph) spatial statistics for multiple images
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Since Nov 26, 2024.
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Description
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Hi,
So in squidpy, you can feed a library_id to sq.tl.spatial_neghbours function to make sure you build a network per image, with multiple images.
But how do you account for multiple images in non-graph based spatial functions such as Ripley's statistics (https://squidpy.readthedocs.io/en/stable/api/squidpy.gr.ripley.html) or co-occurence (https://squidpy.readthedocs.io/en/stable/api/squidpy.gr.co_occurrence.html). Do these functions account for multiple images in an adata object? For instance, looking for library_id by default?
Thanks!
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