Infer parameters in `sq.gr.spatial_neighbors` when only one choice
Open
@timtreis is already working on this.
Since Aug 21, 2024.
enhancement :sparkles:
graph :spider_web:
sdata compat :milky_way:
- Dominant language
- Python
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Description
I'm working on tutorial notebooks right now and ran into a minor hiccup when running sq.gr.spatial_neighbors(). @giovp already ported the function to work with spatialdata (thanks!) but the function requires manual input of the parameters elements_to_coordinate_systems and table_key, even if those are the only options.
I propose to automatically infer these instead when there are no other choices anyway and just notify the user of that fact. Any objections?
sq.gr.spatial_neighbors(
sdata_merfish,
elements_to_coordinate_systems={"cells": "global"},
table_key="table"
)
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