Allow for spatial perturbation screen analysis
Open
Nobody has claimed this yet.
diff analysis :bar_chart:
squidpy2.0
workstream
- Dominant language
- Python
- Stars
- 598
- Forks
- 121
- Avg merge
- 3d 11h
- Merged PRs (30d)
- 3
Description
Initial data is coming up in which perturbation screens have been analysed using spatial technologies. This workstream should deal with tools to analyse and compare these data.
@Zethson
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
The issue names no files, tests, or entry points. Start by reviewing the existing spatial-analysis and perturbation-screen capabilities in the repository, then define which tools should analyze and compare spatial perturbation-screen data. Done should mean the scope is concrete and the agreed analysis and comparison workflow is implemented with validation.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics, data
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100