Reading in MERSCOPE sample data with squidpy.read.vizgen() doesn't work for every dataset?
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@giovp is already working on this.
Since May 9, 2023.
I/O :cd:
sdata compat :milky_way:
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Description
Dear all,
I tried to follow this workflow (https://squidpy.readthedocs.io/en/stable/external_tutorials/tutorial_vizgen_mouse_liver.html) for the Human Liver cancer dataset (https://info.vizgen.com/ffpe-showcase) instead. But when using squidpy.read.vizgen(), the obsm and var from the AnnData object are only filled with NaN, despite the documents containing the same information as the mouse liver dataset. Did anyone have this problem before and knows how to solve it?
Thanks very much in advance!
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