Squidpy comparative statistics
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@giovp is already working on this.
Since Feb 17, 2023.
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Description
We’re looking to use squidpy to generate comparative spatial statistics across multiple samples.
I see we can supply the sample key by library_key in squidpy.gr.spatial_neighbors so that the spatial graph is generated for each sample independently, but how does one then use squidpy.gr.nhood_enrichment, sq.gr.interaction_matrix, sq.gr.centrality_scores functions to generate ‘per sample’ statistics to compare between samples.
the adata.uns output from the ```.gr.` functions returns arrays - how does one access the column/row names for these arrays?
thanks!
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