scverse / scverse/squidpy

clustering accounting for spatial coordinates

Open
#13 12 comments 0 reactions 2 assignees View on GitHub

@M0hammadL is already working on this.

Since Sep 14, 2020.

enhancement :sparkles: graph :spider_web:
Dominant language
Python
Stars
598
Forks
121
Avg merge
3d 11h
Merged PRs (30d)
3

Description

Not very clear idea, but something along these lines: https://www.biorxiv.org/content/10.1101/2020.09.04.283812v1
Maybe a way to achieve similar results without explicit modelling and inference. It's essentially a smoothing of cluster assignments on spatial coordinates.

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Assessment

This issue has not been assessed yet.

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.