scverse / scverse/squidpy

We shouldn't use assert_adata_equal

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Dominant language
Python
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Description

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Since it's not part of anndata public api

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Search the repository for uses of assert_adata_equal and inspect the surrounding tests and imports to identify where it is relied on. Confirm the supported anndata comparison approach from the relevant project context, then ensure those usages no longer depend on the non-public helper and that the affected tests still pass.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
testing-qa
Issue type
Refactor
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
45/100

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