query.bounding_box not cropping the table
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- Python
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Description
The code print(sdata)
print(sdata.tables['table'])
def crop(sdata):
return sdata.query.bounding_box(
min_coordinate=[2000, 2000], max_coordinate=[2200, 2200], axes=("x", "y"), target_coordinate_system="global"
)
print()
csdata=crop(sdata)
print(csdata)
does not return any error, but the cropped csdata does not have a table, and does not return any warning message
The function works well with the blob example dataset. What can I miss ? I do have spatial keys in my adata obsm. Thanks for your help!
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reproducing the shown query.bounding_box call and inspecting sdata.tables['table'] before and after cropping. Compare the result with the blob example dataset, including the spatial keys in adata.obsm. Done means the table is handled consistently or the missing-table condition produces a useful warning.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- data
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100