questions about alignment in Figure 2b
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Description
Hi @joshmoore , when you mapped each element (xenium rep1, xenium rep2, visium) to the 'aligned' coordinate system, did you use gene expression data? I have checked the code for paper_reproducibility, and I think you didn't consider gene expression data but spatial coordinates. Is that correct? Thank you.
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Research direction
Review the paper_reproducibility code and the Figure 2b context to determine whether mapping xenium rep1, xenium rep2, and visium to the aligned coordinate system uses gene expression or spatial coordinates. Done means recording a clear, evidence-based answer in the issue.
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Assessment
- Tech stack
- python
- Domain
- bioinformatics
- Issue type
- Documentation
- Difficulty
- 1/5
- Estimated time
- Under an hour
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100