Make a biological transformation notebook
Nobody has claimed this yet.
- Dominant language
- Python
- Stars
- 394
- Forks
- 95
- Avg merge
- 4d 3h
- Merged PRs (30d)
- 7
Description
The transformation notebook is centered on showing how the API works and not in telling a biological story (for instance it uses a raccoon image image instead of a biological dataset).
This issue tracks our plan to move the notebook in a more technical section aimed at methods developers and make a new notebooks targeting analysts, where a biological story making use of our transformation system is presented.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reading the linked transformation notebook and identify how it is currently organized around the API. Define the analyst-facing biological story and dataset, then determine how the existing notebook should move to a methods-focused section. Done means the technical notebook is relocated and a new analyst notebook demonstrates the transformation system through a biological use case.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- jupyter-notebook, python
- Domain
- documentation
- Issue type
- Documentation
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100