Any way to map the probes sequences with the bins?
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- Dominant language
- Python
- Stars
- 394
- Forks
- 95
- Avg merge
- 4d 3h
- Merged PRs (30d)
- 7
Description
Hey, I'd like to map the probes sequence (GGTGACA...., etc) with the location of each bin on the 2 micron so I can match with TCR sequences found in the data. Is there a way to map the sequence of each bin together with the observations so this overlap could be plotted?
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
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Research direction
The issue names no files, tests, or entry points. Start by reviewing the repository’s spatial-data interfaces for probe sequences, bin locations, and observations; done means establishing whether these can be joined and visualized together with the TCR sequences.
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Assessment
- Tech stack
- python
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100