Extract Image features from VisiumHD and Squidpy
Open
Nobody has claimed this yet.
enhancement ✨
question ❓
- Dominant language
- Python
- Stars
- 394
- Forks
- 95
- Avg merge
- 4d 3h
- Merged PRs (30d)
- 7
Description
Hi,
I am wondering if it is possible to extract image features from a visium HD dataset using spatialdata and squidpy? Is this supported?
Thanks,
Sokratia
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing the spatialdata and Squidpy documentation for Visium HD datasets and image-feature extraction support. The issue does not name files, tests, or entry points; completion would require clarifying whether this is supported and, if not, defining the integration scope.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics, data
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100