Simplify `read_table_and_validate()` for S3 storages
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- Dominant language
- Python
- Stars
- 394
- Forks
- 95
- Avg merge
- 4d 3h
- Merged PRs (30d)
- 7
Description
The function def read_table_and_validate() in src/spatialdata/_io/_utils.py can be simplified now that the new release of anndata handles remote consolidate metadata. See comment in the code.
Just a small fix required.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start in src/spatialdata/_io/_utils.py at read_table_and_validate() and read the code comment about anndata's remote consolidate metadata handling. Simplify the function for S3-backed storage as described, while preserving table validation behavior; completion means the obsolete handling is removed and the existing behavior remains correct.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- aws, python
- Domain
- cloud, data
- Issue type
- Refactor
- Difficulty
- 2/5
- Estimated time
- 1-3 hours
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 52/100