`sdata.write()` broken -> Reason why GH actions fail
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bug 🚨
- Dominant language
- Python
- Stars
- 394
- Forks
- 95
- Avg merge
- 4d 3h
- Merged PRs (30d)
- 7
Description
MRE
from spatialdata.datasets import blobs
blobs().write("./blob.zarr")
fails with
FileNotFoundError: [Errno 2] No such file or directory: '/Users/tim.treis/Documents/GitHub/spatialdata-notebooks/notebooks/examples/blob.zarr/images/blobs_image/0/0/0/0'
Inspecting the created file shows that it only goes one 0 deep, so -> .../blobs_image/0/
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
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- Open a pull request that references the issue number.
Research direction
Run the minimal example using spatialdata.datasets.blobs and blobs().write("./blob.zarr") to reproduce the FileNotFoundError. Inspect the generated blob.zarr path, especially images/blobs_image, and compare the created directory depth with the path the write operation expects; done means the example completes without the missing-path error.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- data
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 42/100