scverse / scverse/spatialdata

`value_key` is ignored in `aggregate()` for images

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method: aggregation 🔢 needs: triage priority: medium
Dominant language
Python
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394
Forks
95
Avg merge
4d 3h
Merged PRs (30d)
7

Description

When aggregating images by labels, all the channels are used and value_key is ignored, we should use it instead.

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Locate the image-handling path in aggregate() and inspect any existing aggregation tests. Reproduce aggregation by labels with value_key set, then update the behavior so the selected value_key controls the channels and verify that other channels are not used.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
data
Issue type
Bug
Difficulty
2/5
Estimated time
1-3 hours
Activity status
Active
Clarity
Mostly clear
Newbie friendliness
68/100

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