scverse / scverse/spatialdata

Aggregation with multiscale objects

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method: aggregation 🔢 needs: triage priority: medium
Dominant language
Python
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394
Forks
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Avg merge
4d 3h
Merged PRs (30d)
7

Description

We need to check that the following works when doing aggregation, and add tests:

  • we can use multiscale images in values
  • we can use multiscale labels in by
  • important subtask, we need to check that in a multiscale labels object, when to_multiscale() is called, this doesn't use interpolation, but it keeps the labels.

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First steps

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  3. Fork the repository and make your change on a branch.
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Research direction

Start by locating the aggregation entry points and the to_multiscale() implementation, then read the existing tests around these operations. Add coverage for multiscale images in values, multiscale labels in by, and label preservation without interpolation; done means all three cases pass.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
data
Issue type
Feature
Difficulty
3/5
Estimated time
1-2 days
Activity status
Active
Clarity
Mostly clear
Newbie friendliness
55/100

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