scverse / scverse/spatialdata-io
Anndata compatible version with spatialdata-io 5.1/5.0
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- Dominant language
- Python
- Stars
- 103
- Forks
- 65
- Avg merge
- 1h 8m
- Merged PRs (30d)
- 3
Description
Hello, i am facing difficulties importing spatialdata-io with anndata 0.12.6. I am running into a problem with importing sparse_dataset. I noticed the same error problem with 0.11.3 version.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Reproduce the import failure with spatialdata-io and anndata 0.12.6, then compare it with anndata 0.11.3. Start at the sparse_dataset import path mentioned in the report; done means spatialdata-io imports successfully with the supported anndata versions and the compatibility behavior is covered or documented.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- data
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 30/100