scverse / scverse/spatialdata-io
Update MACSima reader when stitching is supported
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- Dominant language
- Python
- Stars
- 103
- Forks
- 65
- Avg merge
- 1h 8m
- Merged PRs (30d)
- 3
Description
Talking with @m-albert at the ome-ngff hackathon, he has support for stitching using SpatialImage. We agreed to work together on adding the API for this in SpatialData. Once this work has been completed the MACSima reader as added with #224 should be revisited. This would also allow pipelines such as MCMICRO to use SpatialData throughout the pipeline. cc @kbestak
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing the MACSima reader added in issue #224 and checking the current stitching support in SpatialImage and SpatialData. Confirm the dependent API work is complete before revisiting the reader; done means the reader supports stitching and the MCMICRO pipeline can use SpatialData throughout.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- data
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100