scverse / scverse/spatialdata-io
Remove dummy channel from `xenium`
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xenium
- Dominant language
- Python
- Stars
- 103
- Forks
- 65
- Avg merge
- 1h 8m
- Merged PRs (30d)
- 3
Description
Remove dummy channel from Xenium (introduced with the support for the multimodal segmentation kit). See here https://github.com/scverse/spatialdata-plot/issues/370#issuecomment-2432738929.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reading the Xenium support code and the linked spatialdata-plot issue comment to identify the dummy channel and where it is introduced. Done means Xenium data no longer includes that dummy channel, with the relevant existing tests updated or added to verify the result.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics, data
- Issue type
- Refactor
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100