scverse / scverse/spatialdata-io
Verify compatibility with Xenium Onboard Analysis 3.0
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xenium
- Dominant language
- Python
- Stars
- 103
- Forks
- 65
- Avg merge
- 1h 8m
- Merged PRs (30d)
- 3
Description
A new version of XOA has been released, which supports the new Xenium Prime 5K panels; from the changelog I believe that no modifications are required to for the xenium() reader to support the new format.
- Still we should verify this.
- Also, we should add the new small test datasets to the CI.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Review the xenium() reader and the XOA 3.0 release notes, then inspect the linked small Xenium example datasets and the repository's CI configuration. Verify that the reader handles the new format without changes, and add the datasets to CI so the compatibility check runs successfully.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- data, testing-qa
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100