scverse / scverse/spatialdata-io
How to represent rounds and channels in ISS data
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- Dominant language
- Python
- Stars
- 103
- Forks
- 65
- Avg merge
- 1h 8m
- Merged PRs (30d)
- 3
Description
For using ISS data one needs to know the "round" and "channel" for each image.
Is it within scope to represent this metadata in SpatialData?
I could not see anything about this here: https://github.com/scverse/spatialdata-io/blob/main/src/spatialdata_io/readers/iss.py
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reading src/spatialdata_io/readers/iss.py and the linked ISS reader context. Determine whether round and channel metadata should be represented in SpatialData, where it belongs, and what existing tests or examples would need to define the expected result.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- data
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100