scverse / scverse/scverse-tutorials
Differential expression with pseudobulking
Open
Nobody has claimed this yet.
- Dominant language
- Python
- Stars
- 22
- Forks
- 18
- Avg merge
- 3h 9m
- Merged PRs (30d)
- 9
Description
TODO:
- make tutorial
- link it from scanpy
cc @Zethson @grst @ilan-gold
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reading the referenced scanpy pull request and review thread to understand the differential-expression pseudobulking workflow. Create a tutorial covering that workflow, then link it from scanpy. Done means both checklist items are completed; no tutorial file or test is named in the issue.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics, documentation
- Issue type
- Documentation
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100