New tutorial: query tetramer-staining datasets
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- Dominant language
- Python
- Stars
- 265
- Forks
- 50
- Avg merge
- 9d 9h
- Merged PRs (30d)
- 4
Description
Description of feature
Show that we can not only query referene databases, but also other datasets, e.g. from Tetramer or Dextramer staining.
10x provides some dataset
You could use the BEAMT sample data from 10x for human or mouse? It has clear epitope information and the GEX/Antigen quantification - here is an example of the human EBV/HLA-A*11 public data they have: https://www.10xgenomics.com/datasets/10k-human-a1101-pbmcs-with-ebv-spike-in-beam-t-2-standard#
CC @ncborcherding @RaphaelDeGottardi
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
No file, test, or entry point is named. Start by reviewing the repository's existing tutorial structure and the linked 10x BEAM-T dataset, then determine how its tetramer or dextramer, epitope, GEX, and antigen-quantification data should be queried. Done means a tutorial demonstrates querying a non-reference dataset with the human or mouse sample.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- data, documentation
- Issue type
- Documentation
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Quiet
- Clarity
- Mostly clear
- Newbie friendliness
- 54/100