Clonotype dotplot

In GitLab by @grst on Mar 31, 2020, 16:56

Scanpy has the dotplot with dendrogram for genes, which I find pretty cool. I would imagine it a good chance to get some overview on the whole dataset to show samples, top clonotype, the size of those clonotypes and either the expansion or the publicness/privateness of that clonotype (later, when we have a nice measure for that)

So this could either be:

• the n-top clonotypes of each sample (which would also give us information about how private/public a clonotype is (if it is expanded in multiple samples). However, in most cases they are at least not shared between patients and the plot would look quite sparse.
• The size of the top n clonotypes for each sample (on the x axis would be no specific clonotypes, just the rank). This would give us similar information as the clonal expansion plot

Start by reviewing the Scanpy dotplot with dendrogram referenced in the issue and compare the two proposed views: top clonotypes per sample or ranked clonotype sizes. The issue does not name files, tests, an entry point, or a settled definition of done; clarify the visualization design and expected clonotype measures before implementation.