In ir.pl.repertoire_overlap() function the `fraction` param is not working
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- Python
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Description
When using the ir.pl.repertoire_overlap( ) function I get the same result with or without fraction=True.
The output is the clonotype size (nr of cells) in each sample, whereas what I would like to plot is the relative abundance of the clone in the sample. I would also like to plot the log10 scale (so that smaller frequencies are more visible). How can I do that?
An example of the current plot I am getting:
Thanks a lot for your support.
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Research direction
Start with the ir.pl.repertoire_overlap() entry point and reproduce the reported plot with fraction omitted and set to True. Check whether the plotted values change to relative clone abundance and whether the requested log10 display is supported; done means the function clearly produces the intended relative-abundance visualization.
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Assessment
- Tech stack
- python
- Domain
- data-visualization
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100