Refactoring group_abundance.
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breaking-change
- Dominant language
- Python
- Stars
- 265
- Forks
- 50
- Avg merge
- 9d 9h
- Merged PRs (30d)
- 4
Description
The current group_abundance function is relatively slow.
Also I don't like the name too much.
barplot or stackedbarplot is better. x, y and color are better argument names.
Maybe this could even be merged upstream into scanpy.
See also:
https://sc-dandelion.readthedocs.io/en/master/api.html#module-dandelion.plotting
- sort plot segements (#186)
- get colors from anndata
- get variables not only from obs, but also airr, X, obsm etc.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by locating the current group_abundance entry point and reading the linked dandelion plotting API, then review issue #186 for the sorting dependency. Confirm the intended scope for performance, naming, color sourcing, and variable sources; done should be defined by agreed behavior and tests for the selected changes.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- data-visualization
- Issue type
- Refactor
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100