Ingest Concat
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- Dominant language
- Python
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Description
Hi
After I performed ingest, I need to concatenate the two datasets. But when followed the tutorial, used concatenated but this function doesn't;t concatenate the .obsm, therefore the UMAP coordinates are not merged. How did you manage to performed UMAP on the integrated/concatenated dataset?
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing the tutorial's concatenation workflow and reproducing what happens to .obsm and the UMAP coordinates after ingest. No source file or test is named, so locate the concat entry point and related tests before deciding whether the expected behavior is a code change or documentation clarification; done means the behavior and the UMAP workflow are explicitly verified.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics, data
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100