scverse / scverse/scanpy

Cluster cols and rows of stacked violin

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#932 4 comments 0 reactions 0 assignees View on GitHub

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Area - Plotting 🌺
Dominant language
Python
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Description

  • Additional function parameters / changed functionality / changed defaults?

Could you add functionality to allow for clustering of both the columns and the rows of the stacked violin plot (e.g., dendrogram_col = True, dendrogram_row = True), similar to what pheatmap does for heatmaps in R?

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Research direction

The issue does not identify a file, test, or entry point. Begin by locating the stacked violin plotting implementation and its tests, using pheatmap’s row and column dendrogram behavior as the reference. Done means stacked violin plots support clustering for both columns and rows, with the requested controls verified by tests.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
data-visualization
Issue type
Feature
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
30/100

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