Jackstraw implementation in scanpy?
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- Python
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Description
Hi,
In the scanpy, has anyone tried implementing jackstraw using anndata? If anyone has written a code to find the significant PCs in scanpy, please do share or any guide to perform it would be greatly appreciated! Thanks so much
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First steps
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Research direction
The request names scanpy, AnnData, jackstraw, and significant principal components but does not identify files, tests, or an existing entry point. First determine how scanpy currently handles principal-component significance and where an AnnData-based implementation would belong; done means a defined implementation scope and tests demonstrating the expected significant-PC results.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100